Preseq¶

Description¶

The preseq package is aimed at predicting and estimating the complexity of a genomic sequencing library, equivalent to predicting and estimating the number of redundant reads from a given sequencing depth and how many will be expected from additional sequencing using an initial sequencing experiment. The estimates can then be used to examine the utility of further sequencing, optimize the sequencing depth, or to screen multiple libraries to avoid low complexity samples.

Environment Modules¶

Run module spider preseq to find out what environment modules are available for this application.

Environment Variables¶

HPC_PRESEQ_DIR - installation directory
HPC_PRESEQ_BIN - executable directory
HPC_PRESEQ_BIN - documentation directory

Categories¶

biology, ngs