pplacer¶

Description¶

pplacer places query sequences on a fixed reference phylogenetic tree to maximize phylogenetic likelihood or posterior probability according to a reference alignment. Pplacer is designed to be fast, to give useful information about uncertainty, and to offer advanced visualization and downstream analysis.

Environment Modules¶

Run module spider pplacer to find out what environment modules are available for this application.

Environment Variables¶

HPC_PPLACER_DIR - installation directory
HPC_PPLACER_BIN - executable directory

Categories¶

biology, phylogenetics, genomics