powerfit¶

Description¶

PowerFit is a Python package and simple command-line program to automatically fit high-resolution atomic structures in cryo-EM densities.

Environment Modules¶

Run module spider powerfit to find out what environment modules are available for this application.

Environment Variables¶

HPC_POWERFIT_DIR - installation directory
HPC_POWERFIT_BIN - executable directory

Citation¶

If you publish research that uses powerfit you have to cite it as follows:

G.C.P. van Zundert, & A.M.J.J. Bonvin. (2015). Fast and sensitive rigid-body fitting into cryo-EM density maps with PowerFit. AIMS Biophysics, 2(1), 73–87. https://doi.org/10.3934/biophy.2015.1.73

For the use of image-pyramids and reliability measures for fitting, please cite:

G.C.P. van Zundert, & A.M.J.J. Bonvin. (2016). Defining the limits and reliability of rigid-body fitting in cryo-EM maps using multi-scale image pyramids. Journal of Structural Biology, 195(2), 252–258. https://doi.org/10.1016/j.jsb.2016.06.010

Categories¶

Physics