portcullis

Description

portcullis website

Tool that takes in a BAM file generated by an RNAseq mapper of the user's own choice (e.g. Tophat2, Gsnap, STAR2 or HISAT2) as input (i.e. it's portable), then analyses and quantifies all splice junctions in the file before, filtering (culling) those which are unlikely to be genuine.

Environment Modules

Run module spider portcullis to find out what environment modules are available for this application.

Environment Variables

• HPC_PORTCULLIS_DIR - installation directory
• HPC_PORTCULLIS_BIN - executable directory

Categories

phylogenetics