popoolation

Description

popoolation website

PoPoolation is a pipeline for analysing pooled next generation sequencing data. Currently PoPoolation allows to calculate Tajima’s Pi, Watterson’s Theta and Tajima’s D with a sliding window approach for chromosomes or for set of genes. One of the main challenges in population genomics is to identify regions of intererest on a genome wide scale. We believe that PoPoolation will greatly aid this task by allowing a fast and user friendly analysis of NGS data from DNA pools.

Environment Modules

Run module spider popoolation to find out what environment modules are available for this application.

Environment Variables

• HPC_POPOOLATION_DIR - installation directory
• HPC_POPOOLATION_BIN - executable directory

Categories

biology, phylogenetics