Polypolish

Description

polypolish website

Polypolish is a tool for polishing genome assemblies with short reads. Unlike other tools in this category, Polypolish uses SAM files where each read has been aligned to all possible locations (not just a single best location). This allows it to repair errors in repeat regions that other alignment-based polishers cannot fix.

Environment Modules

Run module spider polypolish to find out what environment modules are available for this application.

Environment Variables

• HPC_POLYPOLISH_DIR - installation directory
• HPC_POLYPOLISH_BIN - executable directory

Categories

biology, genomics