plotsr¶

Description¶

Plotsr generates high-quality visualisation of synteny and structural rearrangements between multiple genomes. For this, it uses the genomic structural annotations between multiple chromosome-level assemblies.

Environment Modules¶

Run module spider plotsr to find out what environment modules are available for this application.

Environment Variables¶

HPC_PLOTSR_DIR - installation directory
HPC_PLOTSR_BIN - executable directory

Citation¶

If you publish research that uses plotsr you have to cite it as follows:

Manish Goel, Korbinian Schneeberger, plotsr: visualizing structural similarities and rearrangements between multiple genomes, Bioinformatics, 2022; btac196, https://doi.org/10.1093/bioinformatics/btac196

Categories¶

genomics, biology