plasme¶

Description¶

PLASMe is a tool to identify plasmid contigs from short-read assemblies using the Transformer. PLASMe capitalizes on the strength of alignment and learning-based methods. Closely related plasmids can be easily identified using the alignment component in PLASMe, while diverged plasmids can be predicted using order-specific Transformer models. * DB - database directory

Environment Modules¶

Run module spider plasme to find out what environment modules are available for this application.

Environment Variables¶

HPC_PLASME_DIR - installation directory
HPC_PLASME_BIN - executable directory

Categories¶

Genomics