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pipits

Description

pipits website

PIPITS is an automated pipeline for analyses of fungal internal transcribed spacer (ITS) sequences from the Illumina sequencing platform. * ITSX_DB - ITSx database directory

Environment Modules

Run module spider pipits to find out what environment modules are available for this application.

Environment Variables

  • HPC_PIPITS_DIR - installation directory
  • HPC_PIPITS_BIN - executable directory

Citation

If you publish research that uses pipits you have to cite it as follows:

Hyun S. Gweon, Anna Oliver, Joanne Taylor, Tim Booth, Melanie Gibbs, Daniel S. Read, Robert I. Griffiths and Karsten Schonrogge, PIPITS: an automated pipeline for analyses of fungal internal transcribed spacer sequences from the Illumina sequencing platform, Methods in Ecology and Evolution, DOI: 10.1111/2041-210X.12399

Categories

biology, sequencing