pipits¶

Description¶

PIPITS is an automated pipeline for analyses of fungal internal transcribed spacer (ITS) sequences from the Illumina sequencing platform.

Environment Modules¶

Run module spider pipits to find out what environment modules are available for this application.

Environment Variables¶

HPC_PIPITS_DIR - installation directory
HPC_PIPITS_BIN - executable directory
ITSX_DB - ITSx database directory

Citation¶

If you publish research that uses pipits you have to cite it as follows:

Gweon, H. S., Oliver, A., Taylor, J., Booth, T., Gibbs, M., Read, D. S., Griffiths, R. I., & Schonrogge, K. (2015). PIPITS: an automated pipeline for analyses of fungal internal transcribed spacer sequences from the Illumina sequencing platform. Methods in Ecology and Evolution, 6(8), 973-980. https://doi.org/10.1111/2041-210X.12399

Categories¶

biology, sequencing