PHYUTILITY¶

Description¶

Phyutility (fyoo-til-i-te) is a command line program that performs simple analyses or modifications on both trees and data matrices. Makes use of JADE (PEBLS) and JEBL libraries. Note: export _JAVA_OPTIONS="-Xmx?g" where ? equals to the available memory.

Environment Modules¶

Run module spider phyutility to find out what environment modules are available for this application.

Environment Variables¶

HPC_PHYUTILITY_DIR - installation directory
HPC_PHYUTILITY_BIN - executable directory
HPC_PHYUTILITY_DOC - documentation directory
HPC_PHYUTILITY_TEST - test data directory

Citation¶

If you publish research that uses phyutility you have to cite it as follows:

Smith, S. A. and Dunn, C. W. (2008) Phyutility: a phyloinformatics tool for trees, alignments, and molecular data. Bioinformatics. 24: 715-716

Categories¶

biology