Skip to content

phyloprocessr

Description

phyloprocessR website

PhyloProcessR is an R-based toolkit that orchestrates external bioinformatics tools (e.g., fastp, BWA, SPAdes, MAFFT, trimAl, samtools, GATK, IQ-TREE, BLAST+) to streamline phylogenetic processing workflows.

Environment Modules

Run module spider phyloprocessR to find out what environment modules are available for this application.

Environment Variables

  • HPC_PHYLOPROCESSR_DIR - installation directory
  • HPC_PHYLOPROCESSR_BIN - executable directory

Categories

biology, phylogenetics, genomics