PhyloBayes¶

Description¶

PhyloBayes-MPI (Lartillot et al, 2013) is a Bayesian Monte Carlo Markov Chain (MCMC) sampler for phylogenetic inference exploiting a message-passing interface system for multi-core computing. The program will perform phylogenetic reconstruction using either nucleotide, protein, or codon sequence alignments. Compared to other phylogenetic MCMC samplers, the main distinguishing feature of PhyloBayes is the use of non-parametric methods based on Dirichlet processes (infinite mixture models) for modeling among-site variation in nucleotide or amino-acid propensities.

Environment Modules¶

Run module spider phylobayes-mpi to find out what environment modules are available for this application.

Environment Variables¶

HPC_PHYLOBAYES_MPI_DIR - installation directory
HPC_PHYLOBAYES_MPI_BIN - executable directory
HPC_PHYLOBAYES_MPI_DOC - documentation directory

Categories¶

biology, phylogenetics