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PhiSpy

Description

phispy website

PhiSpy is a computer program written in C++, Python and R to identify prophages in a complete bacterial genome sequences.

Environment Modules

Run module spider phispy to find out what environment modules are available for this application.

Environment Variables

  • HPC_PHISPY_DIR - installation directory
  • HPC_PHISPY_BIN - executable directory

Citation

If you publish research that uses physpy you have to cite it as follows:

Akhter, S., Aziz, R. K., & Edwards, R. A. (2012). PhiSpy: a novel algorithm for finding prophages in bacterial genomes that combines similarity- and composition-based strategies. Nucleic Acids Research, 40(16), e126. https://doi.org/10.1093/nar/gks406

Categories

phylogenetics