pggb¶

Description¶

This pangenome graph construction pipeline renders a collection of sequences into a pangenome graph (in the variation graph model). Its goal is to build a graph that is locally directed and acyclic while preserving large-scale variation. Maintaining local linearity is important for the interpretation, visualization, and reuse of pangenome variation graphs.

Environment Modules¶

Run module spider pggb to find out what environment modules are available for this application.

Environment Variables¶

HPC_PGGB_DIR - installation directory
HPC_PGGB_BIN - executable directory

Categories¶

phylogenetics