PGDSpider¶
Description¶
PGDSpider is a powerful automated data conversion tool for population genetic and genomics programs. It facilitates the data exchange possibilities between programs for a vast range of data types (e.g. DNA, RNA, NGS, microsatellite, SNP, RFLP, AFLP, multi-allelic data, allele frequency or genetic distances). Note: export _JAVA_OPTIONS="-Xmx?g" where ? equals to the available memory.
Environment Modules¶
Run module spider pgdspider to find out what environment modules are available for this application.
Environment Variables¶
- HPC_PGDSPIDER_DIR - installation directory
- HPC_PGDSPIDER_BIN - executable directory
- HPC_PGDSPIDER_DOC - documentation directory
- HPC_PGDSPIDER_EXE - example data directory
Citation¶
If you publish research that uses pgdspider you have to cite it as follows:
Categories¶
biology, ngs