PerM¶

Description¶

PerM is a software package which was designed to perform highly efficient genome scale alignments for hundreds of millions of short reads produced by the ABI SOLiD and Illumina sequencing platforms. Today PerM is capable of providing full sensitivity for alignments within 4 mismatches for 50bp SOLID reads and 9 mismatches for 100bp Illumina reads.

Environment Modules¶

Run module spider perm to find out what environment modules are available for this application.

Environment Variables¶

HPC_PERM_DIR - installation directory
HPC_PERM_BIN - executable directory

Categories¶

biology, ngs, mapping