PEPPAN¶

Description¶

PEPPAN (Phylogeny Enhanced Pipeline for PAN-genome) is a pipeline that can construct a pan-genome from thousands of genetically diversified bacterial genomes. PEPPAN implements a combination of tree- and synteny-based approaches to identify and exclude paralogous genes, as well as similarity-based gene predictions that support consistent annotations of genes and pseudogenes in individual genomes.

Environment Modules¶

Run module spider peppan to find out what environment modules are available for this application.

Environment Variables¶

HPC_PEPPAN_DIR - installation directory
HPC_PEPPAN_BIN - executable directory

Categories¶

phylogenetics