PBGCpp

Description

pbgcpp website

gcpp takes an alignment in the form of a BAM file and polishes the references with the provided subreads from the alignment. It uses the Arrow algorithm in multi-molecule consensus setting and can reach up to QV60 at coverage 100. GCpp is the machine-code successor of the venerable GenomicConsensus suite which has reached EOL. Command-line parameters are the same as for GenomicConsensus, with the exception of not supporting Quiver/RSII anymore.

Environment Modules

Run module spider pbgcpp to find out what environment modules are available for this application.

Environment Variables

• HPC_PBGCPP_DIR - installation directory
• HPC_PBGCPP_BIN - executable directory

Categories

phylogenetics