PASA¶

Description¶

The Program to Assemble Spliced Alignments (PASA) is used to automatically incorporate ESTs and full-length cDNAs into gene structure annotations, in the process annotating UTRs, alternative splicing variations, and polyadenylation sites. * PASAHOME - base directory * UNIVECDB - UniVec database location

Environment Modules¶

Run module spider pasa to find out what environment modules are available for this application.

Environment Variables¶

HPC_PASA_DIR - installation directory
HPC_PASA_BIN - executable directory
HPC_PASA_CONF - config file directory

Categories¶

biology, genomics, ngs