Usage

Run PartitionFinder programs for nt or aa model analysis respectively as

PartitionFinder.py -p X DIRECTORY

and

PartitionFinderProtein.py -p X DIRECTORY

once the partitionfinder module is loaded where "X" is the number of compute cores requested in the job script and "DIRECTORY" is the full path to a folder containing a configuration file (partition_finder.cfg) and a nucleotide or aminoacid alignment in Phylip format.