Parsnp¶
Description¶
Parsnp is a command-line-tool for efficient microbial core genome alignment and SNP detection. Parsnp was designed to work in tandem with Gingr, a flexible platform for visualizing genome alignments and phylogenetic trees.
Environment Modules¶
Run module spider parsnp to find out what environment modules are available for this application.
Environment Variables¶
- HPC_PARSNP_DIR - installation directory
- HPC_PARSNP_BIN - executable directory
- HPC_PARSNP_DOC - documentation directory
Citation¶
If you publish research that uses parsnp you have to cite it as follows:
Categories¶
biology, phylogenetics