panseq¶

Description¶

Panseq determines the core and accessory regions among a collection of genomic sequences based on user-defined parameters. It readily extracts regions unique to a genome or group of genomes, identifies SNPs within shared core genomic regions, constructs files for use in phylogeny programs based on both the presence/absence of accessory regions and SNPs within core regions.

Environment Modules¶

Run module spider panseq to find out what environment modules are available for this application.

Environment Variables¶

HPC_PANSEQ_DIR - installation directory
HPC_PANSEQ_BIN - executable directory

Categories¶

phylogenetics