PANPIPES

Description

panpipes website

PanPipes is an end-to-end pipeline for pan-genomic graph construction and genetic analysis. Multiple components of the pipeline may have specific utility outside of PanPipes and so have been broken into three application groups: xmfa_tools, gfa_var_genotyper, and brute_impute.

Environment Modules

Run module spider panpipes to find out what environment modules are available for this application.

Environment Variables

• HPC_PANPIPES_DIR - installation directory
• HPC_PANPIPES_BIN - executable directory

Categories

biology