pangolin¶

Description¶

Software package for assigning SARS-CoV-2 genome sequences to global lineages. Pangolin and the pangloLEARN model are frequently updated, so expect the minor version number of the installed components to change regularly.

Environment Modules¶

Run module spider pangolin to find out what environment modules are available for this application.

Environment Variables¶

HPC_PANGOLIN_DIR - installation directory
HPC_PANGOLIN_BIN - executable directory
HPC_PANGOLIN_DOC - documentation directory
HPC_PANGOLIN_EXE - examples directory

Citation¶

citation¶

If you publish research that uses pangolin you have to cite it as follows:

https://github.com/cov-lineages/pangolin#citing-pangolin

Categories¶

phylogenetics