panaroo

Description

panaroo website

panaroo is a pipeline for pangenome investigation

Environment Modules

Run module spider panaroo to find out what environment modules are available for this application.

Environment Variables

• HPC_PANAROO_DIR - installation directory
• HPC_PANAROO_BIN - executable directory

Citation

If you publish research that uses panaroo you have to cite it as follows:

Tonkin-Hill G, MacAlasdair N, Ruis C, Weimann A, Horesh G, Lees JA, Gladstone RA, Lo S, Beaudoin C, Floto RA, Frost SDW, Corander J, Bentley SD, Parkhill J. 2020. Producing polished prokaryotic pangenomes with the Panaroo pipeline. Genome Biol 21:180.

Categories

biology, genomics