panaroo¶
Description¶
panaroo is a pipeline for pangenome investigation
Environment Modules¶
Run module spider panaroo to find out what environment modules are available for this application.
Environment Variables¶
- HPC_PANAROO_DIR - installation directory
- HPC_PANAROO_BIN - executable directory
Citation¶
If you publish research that uses panaroo you have to cite it as follows:
Tonkin-Hill, G., MacAlasdair, N., Ruis, C., Weimann, A., Horesh, G., Lees, J. A., Gladstone, R. A., Lo, S., Beaudoin, C., Floto, R. A., Frost, S. D. W., Corander, J., Bentley, S. D., & Parkhill, J. (2020). Producing polished prokaryotic pangenomes with the Panaroo pipeline. Genome Biology, 21, 180. https://doi.org/10.1186/s13059-020-02090-4
Categories¶
biology, genomics