PAML¶

Description¶

PAML is a package of programs for phylogenetic analyses of DNA or protein sequences using maximum likelihood. It is maintained and distributed for academic use free of charge by Ziheng Yang. PAML is not suitable for building trees. It may be used to estimate parameters and test hypotheses to study the evolutionary process when you have reconstructed trees using other programs such as PAUP*, PHYLIP, MOLPHY, PhyML, RaxML, etc.

Environment Modules¶

Run module spider paml to find out what environment modules are available for this application.

Environment Variables¶

HPC_PAML_DIR - installation directory
HPC_PAML_BIN - executable directory
HPC_PAML_DOC - documentation directory
HPC_PAML_CTL - sample .ctl file directory
HPC_PAML_EX - examples directory
HPC_PAML_DAT - data file directory

Categories¶

biology, phylogenetics