pal2nal¶

Description¶

PAL2NAL is a program that converts a multiple sequence alignment of proteins and the corresponding DNA (or mRNA) sequences into a codon-based DNA alignment.

Environment Modules¶

Run module spider pal2nal to find out what environment modules are available for this application.

Environment Variables¶

HPC_PAL2NAL_DIR - installation directory
HPC_PAL2NAL_BIN - executable directory

Citation¶

If you publish research that uses PAl2NAL you have to cite it as follows:

Suyama, M., Torrents, D., & Bork, P. (2006). PAL2NAL: robust conversion of protein sequence alignments into the corresponding codon alignments. Nucleic acids research, W609–W612. https://doi.org/10.1093/nar/gkl315

Categories¶

protein, sequencing, alignment