Pairtools¶

Description¶

Pairtools: A command-line framework for handling Hi-C read-pair data. Pairtools is a flexible toolkit designed for processing, filtering, and analyzing Hi-C sequencing data. It enables efficient handling of paired-end reads, allowing for rapid processing and quality control.

Environment Modules¶

Run module spider pairtools to find out what environment modules are available for this application.

Environment Variables¶

HPC_PAIRTOOLS_DIR - installation directory
HPC_PAIRTOOLS_BIN - executable directory

Categories¶

bioinformatics, sequencing, Hi-C