Package-GFE¶

Description¶

This software package is for estimating allele and genotype frequencies from nucleotide read quartets (read counts of A, C, G, and T) derived from individual high-throughput sequencing data for multiple diploid individuals from a population by a maximum-likelihood (ML) method.

Environment Modules¶

Run module spider package-gfe to find out what environment modules are available for this application.

Environment Variables¶

HPC_PACKAGEGFE_DIR - installation directory
HPC_PACKAGEGFE_BIN - executable directory
HPC_PACKAGEGFE_DOC - documentation directory
HPC_PACKAGEGFE_EXE - examples directory

Citation¶

If you publish research that uses package-gfe you have to cite it as follows:

Maruki, T., and Lynch, M., (2015) Genotype-frequency estimation from high-throughput sequencing data. Genetics (in press).

Categories¶

biology, genomics