p53MH¶
Description¶
Computes a score between 0 and 100 for each site in the DNA sequence of a gene. A high score indicates an increased probability that n nucleotides at that and subsequent sites represent a p53 binding site, where n = 2 × 10 + (selected length of spacer region).
Environment Modules¶
Run module spider p53mh to find out what environment modules are available for this application.
Environment Variables¶
- HPC_P53MH_DIR - installation directory
- HPC_P53MH_BIN - executable directory
- HPC_P53MH_DAT - data directory
Additional Usage Information¶
p53MH requires a data file. You can copy the example data file to your current working directory with the follow command:
ml p53mh
cp $HPC_P53MH_DAT/* .
Citation¶
If you publish research that uses p53mh you have to cite it as follows:
Categories¶
biology, sequencing