Orthograph¶
Description¶
ORTHOGRAPH: Orthology prediction using a Graph-based, Reciprocal Approach with Profile Hidden Markov models
Environment Modules¶
Run module spider orthograph to find out what environment modules are available for this application.
Environment Variables¶
- HPC_ORTHOGRAPH_DIR - installation directory
- HPC_ORTHOGRAPH_BIN - executable directory
Citation¶
If you publish research that uses orthograph you have to cite it as follows:
Petersen, M., Meusemann, K., Donath, A., Dowling, D., Liu, S., Peters, R. S., Podsiadlowski, L., Vasilikopoulos, A., Zhou, X., Misof, B., & Niehuis, O. (2017). Orthograph: a versatile tool for mapping coding nucleotide sequences to clusters of orthologous genes. BMC Bioinformatics, 18(1), 111. https://doi.org/10.1186/s12859-017-1529-8
Categories¶
orthology