OrthoFiller¶

Description¶

OrthoFiller simultaneously leverages data from multiple species to mutually improve genome annotations. It is designed specifically to address the problem of “missing” genes in sets of predicted genes: that is, to identify those genes that should be present in a genome’s annotation, but which have not been predicted, and whose existence can be verified through comparison with known gene families. OrthoFiller requires only a set of input genome files and a set of corresponding gene GTF files.

Environment Modules¶

Run module spider orthofiller to find out what environment modules are available for this application.

Environment Variables¶

HPC_ORTHOFILLER_DIR - installation directory
HPC_ORTHOFILLER_BIN - executable directory
HPC_ORTHOFILLER_EXE - exmples directory

Categories¶

phylogenetics