OptiType¶

Description¶

OptiType is a novel HLA genotyping algorithm based on integer linear programming, capable of producing accurate 4-digit HLA genotyping predictions from NGS data by simultaneously selecting all major and minor HLA Class I alleles.

Environment Modules¶

Run module spider optitype to find out what environment modules are available for this application.

Environment Variables¶

HPC_OPTITYPE_DIR - installation directory
HPC_OPTITYPE_BIN - executable directory
HPC_OPTITYPE_DOC - documentation directory
HPC_OPTITYPE_EXE - test directory
HPC_OPTITYPE_DAT - data directory
HPC_OPTITYPE_CONF - config directory

Categories¶

biology, phylogenetics