ont_tutorial_cas9¶
Description¶
The Evaluation of read-mapping characteristics from a Cas-mediated PCR-free enrichment tutorial demonstrates a workflow for mapping long DNA sequence reads to a reference genome, and evaluates the performance of a Cas9 based target enrichment strategy. This workflow is suitable for Oxford Nanopore fastq sequence collections and requires a reference genome and a BED file of target coordinates.
Environment Modules¶
Run module spider ont_tutorial_cas9
to find out what environment modules are available for this application.
Environment Variables¶
- HPC_ONTTUTORIALCAS9_DIR - installation directory
- HPC_ONTTUTORIALCAS9_BIN - executable directory
Categories¶
phylogenetics