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OmniPeak

Description

omnipeak website

OmniPeak is a universal HMM-based peak caller capable of processing a broad range of ChIP-seq, ATAC-seq, and single-cell ATAC-seq datasets of different quality.

Note: export _JAVA_OPTIONS="-Xmx?g" where ? equals to the available memory.

Environment Modules

Run module spider omnipeak to find out what environment modules are available for this application.

Environment Variables

  • HPC_OMNIPEAK_DIR - installation directory

Categories

biology, ngs