OCOCO¶
Description¶
OCOCO: the first online consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.
Environment Modules¶
Run module spider ococo to find out what environment modules are available for this application.
Environment Variables¶
- HPC_OCOCO_DIR - installation directory
- HPC_OCOCO_BIN - executable directory
- HPC_OCOCO_SCP - scripts directory
- HPC_OCOCO_EXE - examples directory
Citation¶
If you publish research that uses ococo you have to cite it as follows:
Brinda, K., Boeva, V., & Kucherov, G. (2017). Ococo: an online variant and consensus caller. arXiv preprint arXiv:1712.01146 [q-bio.GN]. https://doi.org/10.48550/arXiv.1712.01146
Categories¶
biology, phylogenetics