Oases¶

Description¶

Oases is a de novo transcriptome assembler designed to produce transcripts from short read sequencing technologies, such as Illumina, SOLiD, or 454 in the absence of any genomic assembly. It was developed by Marcel Schulz (MPI for Molecular Genomics) and Daniel Zerbino (previously at the European Bioinformatics Institute (EMBL-EBI), now at UC Santa Cruz).

Environment Modules¶

Run module spider oases to find out what environment modules are available for this application.

Environment Variables¶

HPC_OASES_DIR - installation directory
HPC_OASES_BIN - executable directory
HPC_OASES_DOC - documentation directory

Categories¶

biology, ngs, assembly