oarfish¶

Description¶

oarfish is a rust language-based program for quantifying transcript-level expression from long-read (Oxford nanopore cDNA and direct RNA and PacBio) sequencing technologies. oarfish requires a sample of sequencing reads aligned to the transcriptome (currently not to the genome). It handles multi-mapping reads through use of probabilistic allocation via an expectation-maximization (EM) algorithm.

Environment Modules¶

Run module spider oarfish to find out what environment modules are available for this application.

Environment Variables¶

HPC_OARFISH_DIR - installation directory
HPC_OARFISH_BIN - executable directory

Categories¶

genomics, ngs, nanopore