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NucleoATAC

Description

nucleoatac website

Python package for calling nucleosomes using ATAC-seq data. Also includes general scripts for working with paired-end ATAC-seq data (or potentially other paired-end data).

Environment Modules

Run module spider nucleoatac to find out what environment modules are available for this application.

Environment Variables

  • HPC_NUCLEOATAC_DIR - installation directory
  • HPC_NUCLEOATAC_BIN - executable directory

Citation

If you publish research that uses nucleoatac you have to cite it as follows:

Schep, A. N., Buenrostro, J. D., Denny, S. K., Schwartz, K., Sherlock, G., & Greenleaf, W. J. (2015). Structured nucleosome fingerprints enable high-resolution mapping of chromatin architecture within regulatory regions. Genome Research, 25(11), 1757–1770. https://doi.org/10.1101/gr.192294.115

Categories

biology