ntJoin¶

Description¶

ntJoin takes a target assembly and one or more 'reference' assembly as input, and uses information from the reference(s) to scaffold the target assembly. The 'reference' assemblies can be true reference assembly builds, or a different draft genome assemblies. Instead of using costly alignments, ntJoin uses a more lightweight approach using minimizer graphs to yield a mapping between the input assemblies.

Environment Modules¶

Run module spider ntjoin to find out what environment modules are available for this application.

Environment Variables¶

HPC_NTJOIN_DIR - installation directory
HPC_NTJOIN_BIN - executable directory

Categories¶

biology, genomics