nQuire¶

Description¶

nQuire implements a set of commands to estimate ploidy level of individuals from species, where recent polyploidization occurred and intraspecific ploidy variation is observed. Specifically, nQuire uses next-generation sequencing data to distinguish between diploids, triploids and tetraploids, on the basis of frequency distributions at variant sites where only two bases are segregating.

Environment Modules¶

Run module spider nquire to find out what environment modules are available for this application.

Environment Variables¶

HPC_NQUIRE_DIR - installation directory
HPC_NQUIRE_BIN - executable directory

Categories¶

phylogenetics