NOVOPlasty¶
Description¶
NOVOPlasty is a de novo assembler and heteroplasmy/variance caller for short circular genomes.
Environment Modules¶
Run module spider novoplasty to find out what environment modules are available for this application.
Environment Variables¶
- HPC_NOVOPLASTY_DIR - installation directory
- HPC_NOVOPLASTY_BIN - executable directory
- HPC_NOVOPLASTY_DOC - documentation directory
- HPC_NOVOPLASTY_EXE - examples directory
- HPC_NOVOPLASTY_CONF - config directory
- HPC_NOVOPLASTY_CIRC - circos directory
Citation¶
If you publish research that uses novoplasty you have to cite it as follows:
Dierckxsens, N., Mardulyn, P., & Smits, G. (2016). NOVOPlasty: De novo assembly of organelle genomes from whole genome data. Nucleic Acids Research, 45(4), e18. https://doi.org/10.1093/nar/gkw955
Categories¶
phylogenetics