Nipype

Description

nipype website

Nipype, an open-source, community-developed initiative under the umbrella of NiPy, is a Python project that provides a uniform interface to existing neuroimaging software and facilitates interaction between these packages within a single workflow. Nipype provides an environment that encourages interactive exploration of algorithms from different packages (e.g., SPM, FSL, FreeSurfer, AFNI, Slicer), eases the design of workflows within and between packages, and reduces the learning curve necessary to use different packages. Nipype is creating a collaborative platform for neuroimaging software development in a high-level language and addressing limitations of existing pipeline systems.

Environment Modules

Run module spider nipype to find out what environment modules are available for this application.

Environment Variables

• HPC_NIPYPE_DIR - installation directory
• HPC_NIPYPE_BIN - executables directory

Citation

If you publish research that uses nipype you have to cite it as follows:

Gorgolewski K, Burns CD, Madison C, Clark D, Halchenko YO, Waskom ML, Ghosh SS. (2011). Nipype: a flexible, lightweight and extensible neuroimaging data processing framework in Python. Front. Neuroimform. 5:13.

Categories

biology, neuroscience, imaging