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NGS-SDK

Description

ngs-sdk website

NGS is a new, domain-specific API for accessing reads, alignments and pileups produced from Next Generation Sequencing. The API itself is independent from any particular back-end implementation, and supports use of multiple back-ends simultaneously. It also provides a library for building new back-end "engines". The API is currently expressed in C++, Java and Python languages. The design makes it possible to maintain a high degree of similarity between the code in one language and code in another - especially between C++ and Java. The online documentation is located at http://www.ncbi.nlm.nih.gov/books/NBK47540/

Environment Modules

Run module spider ngs-sdk to find out what environment modules are available for this application.

Environment Variables

  • HPC_NGSSDK_DIR - installation directory
  • HPC_NGSSDK_BIN - executable directory
  • HPC_NGSSDK_LIB - library directory
  • HPC_NGSSDK_INC - includes directory
  • HPC_NGSSDK_JAVA - java bindings directory
  • HPC_NGSSDK_PYTHON - python bindings directory

Categories

biology, healthcare, programming, library