NextGenMap¶
Description¶
NextGenMap is a flexible highly sensitive short read mapping tool that handles much higher mismatch rates than comparable algorithms while still outperforming them in terms of runtime. This allows analysing large scale datasets even with increased SNP rates or higher error rates (e.g. caused by specialized experimental protocols) and avoids bias.
Environment Modules¶
Run module spider nextgenmap to find out what environment modules are available for this application.
Environment Variables¶
- HPC_NEXTGENMAP_DIR - installation directory
- HPC_NEXTGENMAP_BIN - executable directory
Citation¶
If you publish research that uses nextgenmap you have to cite it as follows:
Categories¶
phylogenetics