Nextflow

Description

nextflow website

Data-driven computational pipelines Nextflow enables scalable and reproducible scientific workflows using software containers. It allows the adaptation of pipelines written in the most common scripting languages. Its fluent DSL simplifies the implementation and the deployment of complex parallel and reactive workflows on clouds and clusters. Note: UFRC currently cannot provide access to Docker and /ufrc does not support OverlayFS, so nextflow is not currently able to manage containers at UFRC. Use environment modules instead.

Environment Modules

Run module spider nextflow to find out what environment modules are available for this application.

Environment Variables

• HPC_NEXTFLOW_DIR - installation directory

Categories

biology, workflow_automation