nextclade¶

Description¶

Nextclade is an open-source project for viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement.

Run module spider nextclade to find out what environment modules are available for this application.

If you publish research that uses nextclade you have to cite it as follows:

Hadfield et al., Nextstrain: real-time tracking of pathogen evolution , Bioinformatics (2018)

phylogenetics, genomics