Newbler¶

Description¶

The GS Data Analysis Software package includes the tools to investigate complex genomic variation in samples including de novo assembly, reference guided alignment and variant calling, and low abundance variant identification and quantification. The suite of software is provided with the GS Junior and GS FLX System at no additional cost and allows researchers to begin interpreting sequence data immediately, without the need to invest in complex and expensive third party solution. Each of the software tools incorporates flow and signal information into the sequence analysis algorithms leading to higher confidence variant calling. Additionally, researchers can interrogate sequence data down to the flow-by-flow signal intensities used in base calling.

Environment Modules¶

Run module spider newbler to find out what environment modules are available for this application.

Environment Variables¶

HPC_NEWBLER_DIR - installation directory
HPC_NEWBLER_BIN - executable directory
HPC_NEWBLER_DOC - documentation directory

Categories¶

biology, ngs, assembly, de_novo