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Necklace

Description

necklace website

In species where the reference genome or annotation is incomplete, RNA-Seq analyses can benefit from performing a genome-guided and de novo assembly, in addition to using the reference annotation. Necklace is a software pipeline to run genome-guided and de novo assembly and combine the resulting transcriptomes with reference genome annotations.

Environment Modules

Run module spider necklace to find out what environment modules are available for this application.

Environment Variables

  • HPC_NECKLACE_DIR - installation directory
  • HPC_NECKLACE_BIN - executable directory
  • HPC_NECKLACE_CONF - necklace.groovy file

Additional Usage Information

Note: Make sure to use HPC_NECKLACE_CONF to point the software to the necklace.groovy file.

Categories

biology, phylogenetics