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ncbi-fcs

Description

ncbi-fcs website

The NCBI Foreign Contamination Screen (FCS) is a tool suite for identifying and removing contaminant sequences in genome assemblies. Contaminants are defined as sequences in a dataset that do not originate from the biological source organism and can arise from a variety of environmental and laboratory sources. FCS will help you remove contaminants from genomes before submission to GenBank. FCS inclides FCS-adaptor and FCS-GX. * FCS_DEFAULT_IMAGE - fcs_gx_image * GXDB_LOC - database directory

Environment Modules

Run module spider ncbi-fcs to find out what environment modules are available for this application.

Environment Variables

  • HPC_NCBIFCS_DIR - installation directory
  • HPC_NCBIFCS_BIN - executables directory
  • HPC_NCBIFCS_IMAGES - container directory

Categories

genomics